README.md instructions are out of sync with the code
For instance, the response from the help screen is no longer:
usage: __main__.py [-h] {job_create,ssip_run} ...
but
usage: __main__.py [-h] [-r REACTOR_NAME] [--geom_opt] [--no_geom_opt]
[--json-file JSON_FILENAME] [-z | --hpc | --other-hpc]
[-m | -t | -c]
cml_directory